loadFraserDataSet {FRASER} | R Documentation |
This is a convenient function to load and save a FraserDataSet object. It looks and saves the FraserDataSet objects and HDF5 files on disk under the given working dir. Internally it uses HDF5 files for all assays.
loadFraserDataSet(dir, name = NULL, file = NULL, upgrade = FALSE) saveFraserDataSet(fds, dir = NULL, name = NULL, rewrite = FALSE)
dir |
A path where to save the objects (replaces the working directory) |
name |
The analysis name of the project (saved within the 'dir') |
file |
The file path to the fds-object.RDS file that should be loaded. |
upgrade |
Should the version of the loaded object be updated? |
fds |
A FraserDataSet object ot be saved |
rewrite |
logical if the object should be rewritten. This makes sense if you have filtered or subsetted the object and want to save only the subsetted version |
FraserDataSet
fds <- createTestFraserSettings() name(fds) <- "saveing_test" # make sure the object is saved to disc dontWriteHDF5(fds) <- FALSE fdsSaved <- saveFraserDataSet(fds) fdsSaved # load object from disc fdsLoaded <- loadFraserDataSet(dir=workingDir(fds), name=name(fds)) fdsLoaded all.equal(fdsSaved, fdsLoaded)