match_cell_barcode {FLAMES}R Documentation

Match Cell Barcodes

Description

Match cell barcodes in the given fastq directory with the reference csv, ref_csv. Matches are returned in the output file out_fastq

Usage

match_cell_barcode(
  fastq_dir,
  stats_file,
  out_fastq,
  ref_csv,
  MAX_DIST,
  UMI_LEN = 10L
)

Arguments

fastq_dir

directory containing fastq files to match

stats_file

NEEDED

out_fastq

output filename for matched barcodes

ref_csv

NEEDED

MAX_DIST

int; maximum edit distance

UMI_LEN

int; length of UMI sequences

Value

returns NULL


[Package FLAMES version 1.0.2 Index]