match_cell_barcode {FLAMES} | R Documentation |
Match cell barcodes in the given fastq directory with the reference csv, ref_csv
. Matches are returned
in the output file out_fastq
match_cell_barcode( fastq_dir, stats_file, out_fastq, ref_csv, MAX_DIST, UMI_LEN = 10L )
fastq_dir |
directory containing fastq files to match |
stats_file |
NEEDED |
out_fastq |
output filename for matched barcodes |
ref_csv |
NEEDED |
MAX_DIST |
int; maximum edit distance |
UMI_LEN |
int; length of UMI sequences |
returns NULL