parse_json_config {FLAMES} | R Documentation |
Convert a json configuration file into a named R list, grouped into sub lists according to their usage in the Flames pipeline.
parse_json_config(json_file)
json_file |
the file path to the JSON file to convert into an R list.
This can be the default FLAMES configuration file found using |
A named R list of the parameters in json_file
. Subsections are: pipeline_parameters
,
global_parameters
, isoform_parameters
, alignment_parameters
, realign_parameters
and
transcript_counting
.
config <- get_default_config_file() ## Not run: parse_json_config(config) ## End(Not run)