process_Y {FEAST}R Documentation

Standard way to preprocess the count matrix. It is the QC step for the genes.

Description

Standard way to preprocess the count matrix. It is the QC step for the genes.

Usage

process_Y(Y, thre = 2)

Arguments

Y

A gene expression data (Raw count matrix)

thre

The threshold of minimum number of cells expressing a certain gene (default =2)

Value

A processed gene expression matrix. It is not log transformed

Examples

data(Yan)
YY = process_Y(Y, thre=2)

[Package FEAST version 1.2.0 Index]