ResulTable {EventPointer} | R Documentation |
Extract a table of the top-ranked events from the output of EventPointer_Bootstraps.
ResulTable(EP_Result,coef = 1,number = Inf)
EP_Result |
The output of the function EventPointer_Bootstraps |
coef |
Number specifying which coefficient or contrast of the model is of interest. |
number |
Maximum number of events to list |
A dataframe with a row for the number of top events and the following columns:
deltaPSI: the difference of PSI between conditions
pvalue: raw p-value
lfdr: local false discovery rate
qvalue: adjusted p-value or q-value
data(PSIss) PSI <- PSIss$PSI Dmatrix <- cbind(1,rep(c(0,1),each=2)) Cmatrix <- matrix(c(0,1),nrow=2) Fit <- EventPointer_Bootstraps(PSI = PSI, Design = Dmatrix, Contrast = Cmatrix, cores = 1, ram = 1, nBootstraps = 10, UsePseudoAligBootstrap = TRUE) ResulTable(EP_Result = Fit,coef = 1,number = 5)