prepare_genesize_control_network {EWCE} | R Documentation |
prepare_genesize_control_network
takes a genelist and finds
semi-randomly selected gene lists which are matched for gene length and
GC content
prepare_genesize_control_network( hits, bg, numBOOT = 10000, sctSpecies, sct_data )
hits |
Array of MGI gene symbols containing the target gene list. Must be HGNC symbols. |
bg |
Array of MGI gene symbols containing the background gene list (including hit genes). Must be HGNC symbols. |
numBOOT |
Number of gene lists to sample |
sctSpecies |
Either 'mouse' or 'human' depending on whether MGI or HGNC symbols are used for the single cell dataset |
sct_data |
List generated using |
A list containing three data frames:
hitGenes
: Array of HGNC symbols containing the hit genes.
May be slightly reduced if gene length / GC content could not be found
for all genes.
list_network
: The control gene lists as a data frame of HGNC
symbols
# Called by bootstrap_enrichment_test