bin_columns_into_quantiles {EWCE}R Documentation

bin_columns_into_quantiles

Description

bin_columns_into_quantiles is an internal function used to convert a matrix of specificity (with columns of cell types) intom a matrix of specificity quantiles

Usage

bin_columns_into_quantiles(matrixIn, numberOfBins = 40)

Arguments

matrixIn

The matrix of specificity values

numberOfBins

Number of quantile 'bins' to use (40 is recommended)

Value

A matrix with same shape as matrixIn but with columns storing quantiles instead of specificity

Examples

library(ewceData)
ctd <- ctd()
ctd[[1]]$specificity_quantiles <- apply(ctd[[1]]$specificity, 2,
    FUN = bin_columns_into_quantiles,
    numberOfBins = 40
)

[Package EWCE version 1.2.0 Index]