generate_controlled_bootstrap_geneset {EWCE} | R Documentation |
generate_controlled_bootstrap_geneset
Used to generated celltype
controlled bootstraped
generate_controlled_bootstrap_geneset( hitGenes, sct_data, annotLevel, reps, controlledCT = NULL )
hitGenes |
Array of gene names. The target gene set. |
sct_data |
The cell type data list (with specificity and mean_exp) |
annotLevel |
The level of annotation in sct_data to analyse |
reps |
The number of gene lists to sample |
controlledCT |
Name of a celltype (from colnames of sct_data[[x]]$specificity). |
Matrix of genes (nrows=length(hitGenes),ncols=reps), where each column is a gene list
# See controlled_geneset_enrichment.r