createBigWigDNAmetArray {ELMER} | R Documentation |
Create a bigwig for IGV visualization of DNA methylation data (Array)
createBigWigDNAmetArray( data = NULL, genome = "hg38", met.platform = "450K", track.names = NULL, dir = "IGV_tracks" )
data |
A matrix |
genome |
Which genome build will be used: hg38 (default) or hg19. |
met.platform |
DNA methyaltion platform to retrieve data from: EPIC or 450K (default) |
track.names |
Provide a list of track names (.bw) otherwise the deault is the will be samples.bw |
dir |
Which directory files will be saved |
Tiago Chedraoui Silva (tiagochst at gmail.com)
## Not run: data <- assay(getMet(ELMER:::getdata("elmer.data.example"))) createBigWigDNAmetArray(data = data, met.platform = "450K", genome = "hg38") ## End(Not run)