createTSVTemplates {ELMER}R Documentation

Create examples files for Sample mapping and information used in createMAE function

Description

This function will receive the DNA methylation and gene expression matrix and will create some examples of table for the argument colData and sampleMap used in ceeateMae function.

Usage

createTSVTemplates(met, exp)

Arguments

met

DNA methylation matrix or Summarized Experiment

exp

Gene expression matrix or Summarized Experiment

Examples

gene.exp <- S4Vectors::DataFrame(sample1.exp = c("ENSG00000141510"=2.3,"ENSG00000171862"=5.4),
                  sample2.exp = c("ENSG00000141510"=1.6,"ENSG00000171862"=2.3))
dna.met <- S4Vectors::DataFrame(sample1.met = c("cg14324200"=0.5,"cg23867494"=0.1),
                       sample2.met =  c("cg14324200"=0.3,"cg23867494"=0.9))
createTSVTemplates(met = dna.met, exp = gene.exp)                       

[Package ELMER version 2.18.0 Index]