getPwmFromFile {DiffLogo}R Documentation

generates a pwm from a file of different formats

Description

Generates a pwm from a file of different formats. Supported formats are FASTA files (.fa, .fasta), alignment files (.txt, .text, .al, .alignment), PWM files (.pwm), JASPAR / Position Frequency Matrix files (.pfm), and homer files (.motif).

Usage

getPwmFromFile(filename)

Arguments

filename

the file

Value

a pwm

Examples

fileName = "extdata/pwm/H1-hESC.pwm"
file = system.file(fileName, package = "DiffLogo")
pwm = getPwmFromFile(file)

[Package DiffLogo version 2.18.0 Index]