deepblue_intersection {DeepBlueR} | R Documentation |
Select genomic regions that intersect with at least one region of the second query. This command is a simplified version of the 'overlap' command.
deepblue_intersection(query_data_id = NULL, query_filter_id = NULL, user_key = deepblue_options("user_key"))
query_data_id |
- A string (query data that will be filtered.) |
query_filter_id |
- A string (query containing the regions that the regions of the query_data_id must overlap.) |
user_key |
- A string (users token key) |
id - A string (id of the new query)
Other Operating on the data regions: deepblue_aggregate
,
deepblue_binning
,
deepblue_count_regions
,
deepblue_coverage
,
deepblue_distinct_column_values
,
deepblue_extend
,
deepblue_filter_regions
,
deepblue_flank
,
deepblue_get_experiments_by_query
,
deepblue_get_regions
,
deepblue_input_regions
,
deepblue_merge_queries
,
deepblue_overlap
,
deepblue_query_cache
,
deepblue_query_experiment_type
,
deepblue_score_matrix
,
deepblue_select_annotations
,
deepblue_select_experiments
,
deepblue_select_regions
,
deepblue_tiling_regions
annotation_id = deepblue_select_annotations( annotation_name="CpG Islands", genome="hg19", chromosome="chr1") data_id = deepblue_select_experiments( experiment_name="E002-H3K9ac.narrowPeak.bed") deepblue_intersection(query_data_id = annotation_id, query_filter_id = data_id)