deepblue_collection_experiments_count {DeepBlueR} | R Documentation |
Count the number of experiments that match the selection criteria in each term of the selected controlled_vocabulary. The selection can be achieved through specifying a list of BioSources, experimental Techniques, Epigenetic Marks, Samples or Projects.
deepblue_collection_experiments_count(controlled_vocabulary = NULL, genome = NULL, type = NULL, epigenetic_mark = NULL, biosource = NULL, sample = NULL, technique = NULL, project = NULL, user_key = deepblue_options("user_key"))
controlled_vocabulary |
- A string (controlled vocabulary name) |
genome |
- A string or a vector of string (the target genome) |
type |
- A string or a vector of string (type of the experiment: peaks or signal) |
epigenetic_mark |
- A string or a vector of string (name(s) of selected epigenetic mark(s)) |
biosource |
- A string or a vector of string (name(s) of selected biosource(s)) |
sample |
- A string or a vector of string (id(s) of selected sample(s)) |
technique |
- A string or a vector of string (name(s) of selected technique(s)) |
project |
- A string or a vector of string (name(s) of selected projects) |
user_key |
- A string (users token key) |
terms - A array (controlled_vocabulary terms with count)
Other Inserting and listing experiments: deepblue_faceting_experiments
,
deepblue_list_experiments
,
deepblue_list_recent_experiments
,
deepblue_list_similar_experiments
,
deepblue_preview_experiment
deepblue_collection_experiments_count( controlled_vocabulary="epigenetic_marks", genome = "hg19", type = "peaks", biosource = "blood")