deepblue_get_regions {DeepBlueR} | R Documentation |
Trigger the processing of the query's genomic regions. The output is a column based format with columns as defined in the 'output_format' parameter. Use the command 'info' for verifying the processing status. The 'get_request_data' command is used to download the regions using the programmatic interface. Alternatively, results can be download using the URL: http://deepblue.mpi-inf.mpg.de/download?r_id=<request_id>&key=<user_key>.
deepblue_get_regions(query_id = NULL, output_format = NULL, user_key = deepblue_options("user_key"))
query_id |
- A string (Query ID) |
output_format |
- A string (Output format) |
user_key |
- A string (users token key) |
request_id - A string (Request ID - Use it to retrieve the result with info() and get_request_data())
Other Operating on the data regions: deepblue_aggregate
,
deepblue_binning
,
deepblue_count_regions
,
deepblue_coverage
,
deepblue_distinct_column_values
,
deepblue_extend
,
deepblue_filter_regions
,
deepblue_flank
,
deepblue_get_experiments_by_query
,
deepblue_input_regions
,
deepblue_intersection
,
deepblue_merge_queries
,
deepblue_overlap
,
deepblue_query_cache
,
deepblue_query_experiment_type
,
deepblue_score_matrix
,
deepblue_select_annotations
,
deepblue_select_experiments
,
deepblue_select_regions
,
deepblue_tiling_regions
data_id = deepblue_select_experiments( experiment_name="E002-H3K9ac.narrowPeak.bed") deepblue_get_regions(query_id =data_id, output_format = "CHROMOSOME,START,END")