perBatch {DIAlignR} | R Documentation |
For the ith analyte in multipeptide, this function aligns all runs to the reference run. The result is a dataframe that contains aligned features corresponding to the analyte across all runs.
perBatch( iBatch, peptides, multipeptide, refRuns, precursors, prec2chromIndex, fileInfo, mzPntrs, params, globalFits, RSE, applyFun = lapply )
peptides |
(integer) vector of peptide IDs. |
multipeptide |
(list) contains multiple data-frames that are collection of features
associated with analytes. This is an output of |
refRuns |
(data-frame) output of |
precursors |
(data-frame) atleast two columns transition_group_id and transition_ids are required. |
prec2chromIndex |
(list) a list of dataframes having following columns: |
fileInfo |
(data-frame) output of |
mzPntrs |
(list) a list of mzRpwiz. |
params |
(list) parameters are entered as list. Output of the |
globalFits |
(list) each element is either of class lm or loess. This is an output of |
RSE |
(list) Each element represents Residual Standard Error of corresponding fit in globalFits. |
rownum |
(integer) represnts the index of the multipepetide to be aligned. |
invisible NULL
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2020) + GPL-3 Date: 2020-07-26
alignTargetedRuns, alignToRef, getAlignedTimesFast, getMultipeptide
dataPath <- system.file("extdata", package = "DIAlignR")