alignToRef {DIAlignR} | R Documentation |
df contains unaligned features for an analyte across multiple runs. This function aligns eXp run to ref run and updates corresponding features.
alignToRef( eXp, ref, refIdx, fileInfo, XICs, XICs.ref, params, df, globalFits, RSE )
eXp |
(string) name of the run to be aligned to reference run. Must be in the rownames of fileInfo. |
ref |
(string) name of the reference run. Must be in the rownames of fileInfo. |
refIdx |
(integer) index of the reference feature in df. |
fileInfo |
(data-frame) output of |
XICs |
(list of dataframes) fragment-ion chromatograms of the analytes for all runs. |
XICs.ref |
(list of dataframes) fragment-ion chromatograms of the analyte_chr from the reference run. |
params |
(list) parameters are entered as list. Output of the |
df |
(dataframe) a collection of features related to the peptide |
globalFits |
(list) each element is either of class lm or loess. This is an output of |
RSE |
(list) Each element represents Residual Standard Error of corresponding fit in globalFits. |
invisible NULL
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2020) + GPL-3 Date: 2020-07-26
alignTargetedRuns, perBatch, setAlignmentRank, getMultipeptide
dataPath <- system.file("extdata", package = "DIAlignR")