getLOESSfit {DIAlignR} | R Documentation |
This function selects features from oswFiles which has m-score < maxFdrLoess. It fits LOESS on these feature. Loess mapping is established from reference to experiment run.
getLOESSfit(oswFiles, ref, eXp, maxFdrGlobal, spanvalue = 0.1)
oswFiles |
(list of data-frames) it is output from getFeatures function. |
ref |
(string) Must be a combination of "run" and an iteger e.g. "run2". |
eXp |
(string) Must be a combination of "run" and an iteger e.g. "run2". |
maxFdrGlobal |
(numeric) A numeric value between 0 and 1. Features should have m-score lower than this value for participation in LOESS fit. |
spanvalue |
(numeric) Spanvalue for LOESS fit. For targeted proteomics 0.1 could be used. |
An object of class "loess".
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2019-12-14
data(oswFiles_DIAlignR, package="DIAlignR") ## Not run: Loess.fit <- getLOESSfit(oswFiles = oswFiles_DIAlignR, ref = "run1", eXp = "run2", maxFdrGlobal = 0.05, spanvalue = 0.1) ## End(Not run)