metacellPerLinesHistoPerCondition_HC {DAPAR}R Documentation

Bar plot of missing values per lines and per condition

Description

This method plots a bar plot which represents the distribution of the number of missing values (NA) per lines (ie proteins) and per conditions.

Usage

metacellPerLinesHistoPerCondition_HC(
  obj,
  pattern,
  indLegend = "auto",
  showValues = FALSE,
  pal = NULL
)

Arguments

obj

xxx

pattern

xxx

indLegend

The indice of the column name's in pData() tab

showValues

A logical that indicates wether numeric values should be drawn above the bars.

pal

xxx

Value

A bar plot

Author(s)

Samuel Wieczorek

Examples

utils::data(Exp1_R25_pept, package='DAPARdata')
obj <- Exp1_R25_pept
pal <- ExtendPalette(length(unique( Biobase::pData(obj)$Condition)), 'Dark2')
metacellPerLinesHistoPerCondition_HC(obj, 'missing', pal=pal)
metacellPerLinesHistoPerCondition_HC(obj, 'quanti')


[Package DAPAR version 1.26.1 Index]