splitReads {DAMEfinder} | R Documentation |
Takes a GenomicAlignments object and returns a list of read names dividied by allele.
splitReads(alns, v, snp)
alns |
GenomicAlignments object. |
v |
Nucleotide of reference (or alternative) allele. |
snp |
GRanges object containing SNP location. |
A named list of vectors, each vector containing read names for each allele.