function_run_diffcytDSlimma {CyTOFpower}R Documentation

Run diffcyt-DS-limma model.

Description

Run diffcyt-DS-limma model.

Usage

function_run_diffcytDSlimma(
  ls_desigmat_contrast,
  df_experiment_info,
  ls_features
)

Arguments

ls_desigmat_contrast

list, with design and contrast matrices.

df_experiment_info

data.frame, information about the experiment (donor IDs, group IDs and sample IDs).

ls_features

list, with cell counts and medians for each markers.

Details

Function to run diffcyt-DS-limma model from the diffcyt package.

Value

list with 2 slots: - model_fit: the model fit; - result_summary: results of the model for each marker.


[Package CyTOFpower version 1.0.0 Index]