findSNVs {CrispRVariants} | R Documentation |
Find single nucleotide variants (SNVs) above a specified frequency in a table of variants.
findSNVs(obj, ...) ## S4 method for signature 'CrisprSet' findSNVs(obj, ..., freq = 0.25, include.chimeras = TRUE)
obj |
An object containing variant counts |
... |
additional arguments |
freq |
minimum frequency snv to return (Default: 0.25) |
include.chimeras |
include chimeric reads when calculating SNV frequencies (Default: TRUE) |
A vector of SNVs and their frequencies
Helen Lindsay