feature_annotation_scExp {ChromSCape} | R Documentation |
Add gene annotations to features
feature_annotation_scExp(scExp, ref = "hg38", reference_annotation = NULL)
scExp |
A SingleCellExperiment object. |
ref |
Reference genome. Either 'hg38' or 'mm10'. ('hg38') |
reference_annotation |
A data.frame containing gene (or else) annotation with genomic coordinates. |
A SingleCellExperiment object with annotated rowData.
raw <- create_scDataset_raw() scExp = create_scExp(raw$mat, raw$annot) scExp = feature_annotation_scExp(scExp) head(SummarizedExperiment::rowRanges(scExp)) # Mouse raw = create_scDataset_raw(ref = "mm10") scExp = create_scExp(raw$mat, raw$annot) scExp = feature_annotation_scExp(scExp,ref="mm10") head(SummarizedExperiment::rowRanges(scExp))