subsample_scExp {ChromSCape}R Documentation

Subsample scExp

Description

Randomly sample x cells from each sample in a SingleCellExperiment to return a subsampled SingleCellExperiment with all samples having maximum n cells. If n is higher than the number of cell in a sample, this sample will not be subsampled.

Usage

subsample_scExp(scExp, n_cells = 500)

Arguments

scExp

A SingleCellExperiment

n_cells

An integer number of cells to subsample for each sample (500)

Value

A subsampled SingleCellExperiment

Examples

raw <- create_scDataset_raw()
scExp = create_scExp(raw$mat, raw$annot)
scExp_sub = subsample_scExp(scExp,50)
## Not run: num_cell_scExp(scExp_sub)


[Package ChromSCape version 1.4.0 Index]