intra_correlation_scExp {ChromSCape}R Documentation

Calculate intra correlation between cluster or samples

Description

Calculate intra correlation between cluster or samples

Usage

intra_correlation_scExp(scExp_cf, by = c("sample_id", "cell_cluster")[1])

Arguments

scExp_cf

A SingleCellExperiment

by

On which feature to calculate correlation ("sample_id" or "cell_cluster")

Value

A data.frame of cell average intra-correlation

Examples

data(scExp)
intra_correlation_scExp(scExp, by = "sample_id")
intra_correlation_scExp(scExp, by = "cell_cluster")

[Package ChromSCape version 1.4.0 Index]