annotation_from_merged_peaks {ChromSCape}R Documentation

Find nearest peaks of each gene and return refined annotation

Description

Find nearest peaks of each gene and return refined annotation

Usage

annotation_from_merged_peaks(scExp, odir, merged_peaks, geneTSS_annotation)

Arguments

scExp

A SingleCellExperiment object

odir

An output directory where to write the mergedpeaks BED file

merged_peaks

A list of GRanges object containing the merged peaks

geneTSS_annotation

A GRanges object with reference genes

Value

A data.frame with refined annotation


[Package ChromSCape version 1.4.0 Index]