rawfile_ToBigWig {ChromSCape} | R Documentation |
rawfile_ToBigWig : reads in BAM file and write out BigWig coverage file, normalized and smoothed
rawfile_ToBigWig( filename, BigWig_filename, format = "BAM", bin_width = 150, n_smoothBin = 5, ref = "hg38", read_size = 101 )
filename |
Path to the BAM file (with index) or BED file |
BigWig_filename |
Path to write the output BigWig file |
format |
File format, either "BAM" or "BED" |
bin_width |
Bin size for coverage |
n_smoothBin |
Number of bins for smoothing values |
ref |
Reference genome. |
read_size |
Length of the reads. |
Writes a BigWig file as output