preprocess_TFIDF {ChromSCape}R Documentation

Preprocess scExp - TF-IDF

Description

Preprocess scExp - TF-IDF

Usage

preprocess_TFIDF(scExp, scale = 10000, log = TRUE)

Arguments

scExp

A SingleCellExperiment Object

scale

A numeric to multiply the matrix in order to have human readeable numbers. Has no impact on the downstream analysis

log

Wether to use neperian log on the TF-IDF normalized data or not.

Value

A SingleCellExperiment object.

Examples

raw <- create_scDataset_raw()
scExp = create_scExp(raw$mat, raw$annot)
scExp = preprocess_TFIDF(scExp)
head(SingleCellExperiment::normcounts(scExp))


[Package ChromSCape version 1.4.0 Index]