getBioRegion {ChIPseeker}R Documentation

getBioRegion

Description

prepare a bioregion of selected feature

Usage

getBioRegion(
  TxDb = NULL,
  upstream = 1000,
  downstream = 1000,
  by = "gene",
  type = "start_site"
)

Arguments

TxDb

TxDb

upstream

upstream from start site

downstream

downstream from start site

by

one of 'gene', 'transcript', 'exon', 'intron' , '3UTR' , '5UTR'

type

one of "start_site", "end_site", "body"

Details

this function combined previous functions getPromoters(),getBioRegion(),getGeneBody() https://github.com/GuangchuangYu/ChIPseeker/issues/16 https://github.com/GuangchuangYu/ChIPseeker/issues/87

Value

GRanges object

Author(s)

Guangchuang Yu, Ming L


[Package ChIPseeker version 1.30.3 Index]