plotPeakProf2 {ChIPseeker} | R Documentation |
plot the profile of peaks automatically
plotPeakProf2( peak, upstream, downstream, conf, by, type, weightCol = NULL, TxDb = NULL, xlab = "Genomic Region (5'->3')", ylab = "Peak Count Frequency", facet = "none", free_y = TRUE, verbose = TRUE, nbin = NULL, ignore_strand = FALSE, ... )
peak |
peak file or GRanges object |
upstream |
upstream position |
downstream |
downstream position |
conf |
confidence interval |
by |
one of 'gene', 'transcript', 'exon', 'intron' , '3UTR' , '5UTR' |
type |
one of "start_site", "end_site", "body" |
weightCol |
column name of weight |
TxDb |
TxDb object |
xlab |
xlab |
ylab |
ylab |
facet |
one of 'none', 'row' and 'column' |
free_y |
if TRUE, y will be scaled by AvgProf |
verbose |
print message or not |
nbin |
the amount of nbines |
ignore_strand |
ignore the strand information or not |
... |
additional parameter |
ggplot object
G Yu, Ming Li