plotAvgProf.binning {ChIPseeker} | R Documentation |
plot the profile of peaks by binning
plotAvgProf.binning( tagMatrix, xlab = "Genomic Region (5'->3')", ylab = "Peak Count Frequency", conf, facet = "none", free_y = TRUE, upstream = NULL, downstream = NULL, label, ... )
tagMatrix |
tagMatrix or a list of tagMatrix |
xlab |
x label |
ylab |
y label |
conf |
confidence interval |
facet |
one of 'none', 'row' and 'column' |
free_y |
if TRUE, y will be scaled |
upstream |
rel object reflects the percentage of flank extension, e.g rel(0.2) integer reflects the actual length of flank extension or TSS region NULL reflects the gene body with no extension |
downstream |
rel object reflects the percentage of flank extension, e.g rel(0.2) integer reflects the actual length of flank extension or TSS region NULL reflects the gene body with no extension |
label |
label |
... |
additional parameter |
ggplot object