cdhit_ccdb {CellaRepertorium} | R Documentation |
cdhit()
to cluster a ContigCellDB()
See
https://github.com/weizhongli/cdhit/wiki/3.-User's-Guide#CDHIT for details
on other potential arguments to ...
.
These will override any default values.
cdhit_ccdb( ccdb, sequence_key, type = c("DNA", "AA"), cluster_pk = "cluster_idx", ... )
ccdb |
An object of class |
sequence_key |
|
type |
one of 'DNA' or 'AA' |
cluster_pk |
|
... |
Arguments passed on to
|
data(ccdb_ex) res = cdhit_ccdb(ccdb_ex, 'cdr3_nt', type = 'DNA', cluster_name = 'DNA97', identity = .965, min_length = 12, G = 1) res$cluster_tbl res$contig_tbl res$cluster_pk