plotStateExpression {CellTrails}R Documentation

Visualize feature expression distribution per state

Description

Violin plots showing the expression distribution of a feature per state.

Usage

plotStateExpression(sce, feature_name)

Arguments

sce

A SingleCellExperiment object

feature_name

The name of the feature to be visualized

Details

Each data point displays the feature’s expression value in a single sample. A violine plot shows the density (mirrored on the y-axis) of the expression distribution per sample.

Value

A ggplot object

Author(s)

Daniel C. Ellwanger

See Also

ggplot states

Examples

# Example data
data(exSCE)

plotStateExpression(exSCE, feature_name="feature_1")

[Package CellTrails version 1.12.0 Index]