plotTrajectoryFit {CellTrails}R Documentation

Visualize trajectory fit residuals

Description

Method visualizes the fitting residuals along the trajectory backbone.

Usage

plotTrajectoryFit(sce)

Arguments

sce

A SingleCellExperiment object

Details

Shows the trajectory backbone (longest shortest path between two samples) and the fitting deviations of each sample indicated by the perpendicular jitter. Data points are colorized by state.

Value

A ggplot object

Author(s)

Daniel C. Ellwanger

See Also

fitTrajectory trajResiduals

Examples

# Example data
data(exSCE)

plotTrajectoryFit(exSCE)

[Package CellTrails version 1.12.0 Index]