bc_summary_seqQc {CellBarcode} | R Documentation |
Summary the "total read count" and "read length" of each samples within
a BarcodeQcSet
object, and output a data.frame
with sample by
row and different metrics by column.
bc_summary_seqQc(x) ## S4 method for signature 'BarcodeQcSet' bc_summary_seqQc(x)
x |
a barcodeQcSet object. |
A data.frame
with 5 columns: sample_name
,
total_read
, median_read_length
, p5_read_length
and
p95_read_length.
fq_file <- dir( system.file("extdata", "mef_test_data", package = "CellBarcode"), full=TRUE) bc_summary_seqQc(bc_seq_qc(fq_file)) ###