bc_plot_mutual {CellBarcode} | R Documentation |
Draw barcode count scatter plot for all pairwise combination of samples
within a BarcodeObj
object. It uses cleanBc
slot in the
BarcodeObj
object is used to draw the figure. If the BarcodeObj
object does not have a cleanBc slot, you have to run the bc_cure*
functions in ahead, such as bc_cure_depth
,
bc_cure_umi
.
bc_plot_mutual( barcodeObj, count_marks = NULL, highlight = NULL, log_coord = TRUE, alpha = 0.7 ) ## S4 method for signature 'BarcodeObj' bc_plot_mutual( barcodeObj, count_marks = NULL, highlight = NULL, log_coord = TRUE, alpha = 0.7 )
barcodeObj |
A |
count_marks |
A numeric or numeric vector, specifying the read count cutoff in the scatter plot for each sample. |
highlight |
A character vector, specifying the barcodes to be highlighted. |
log_coord |
A logical value, if TRUE (default), the |
alpha |
A numeric between 0 and 1, specifies the transparency of the dots in the scatter plot. |
A scatter plot matrix.
data(bc_obj) bc_plot_mutual(barcodeObj=bc_obj, count_marks=c(30, 20)) ###