BatchFluo {CONFESS}R Documentation

BatchFluo

Description

It performs the run effect correction of the cell fluorescence signals by flexmix or 2-way ANOVA.

Usage

BatchFluo(data, maxMix, reference, prior.pi, flex.reps, flexmethod, seed)

Arguments

data

List. A list of transformed and adjusted fluorescence signals.

maxMix

Integer. The maximum number of components to fit into the mixture of regressions model. If maxMix=1 or if the the optimal number of the estimated components is 1, the model reduces to the classical 2-way ANOVA.

reference

Numeric vector. Specifies the runs to be used as baseline (iteratively).

prior.pi

Float. The prior probability to accept a component.

flex.reps

Integer. The iterations of the Expectation-Maximization algorithm to estimate the flexmix model.

flexmethod

Character string. A method to estimate the optimal number of flexmix components. One of "BIC", "AIC", "ICL".

seed

Integer. An optional seed number for the Random Number Generator.

Value

A list of fluorescence signals, mixture components and flexmix model estimates


[Package CONFESS version 1.22.0 Index]