immuno_regions {CNVgears} | R Documentation |
Retrieve genomic regions of consecutive immunoglobulin genes
immuno_regions(biotype = NULL, n_genes = 5, mart = NULL)
biotype, |
vector of character, is used to filter the genes based on
|
n_genes, |
integer, number of minimum consecutive genes required to construct an "immunoglobulin region", default is 5. |
mart, |
user provided mart (from
|
a list with two element, the first is a data.table
containing
the actual regions (to be passed to cleaning_filter
for
example), the second is the full genes list (for the required biotypes),
again as data.table
.
## Not run: DT <- immuno_regions(biotype = c("IG_C_gene", "IG_D_gene")) ## End(Not run)