SelectReferenceSetByPercentil {CNVPanelizer}R Documentation

SelectReferenceSetByPercentil

Description

Select a reference set using percentiles

Usage

    SelectReferenceSetByPercentil(allSamplesReadCounts,
                                  normalizationMethod = "tmm",
                                  lowerBoundPercentage = 1,
                                  upperBoundPercentage = 99)

Arguments

allSamplesReadCounts

All samples read counts matrix

normalizationMethod

tmm (trimmed mean of m values) or tss (total sum scaling)

lowerBoundPercentage

Lower bound percentage

upperBoundPercentage

Upper bound percentage

Value

Returns a list of sample identifiers to be used as reference

Author(s)

Cristiano Oliveira

Examples

    
    
    SelectReferenceSetByPercentil(allSamplesReadCounts,
                                  normalizationMethod = "tmm",
                                  lowerBoundPercentage = 1,
                                  upperBoundPercentage = 99)
    

[Package CNVPanelizer version 1.26.0 Index]