SelectReferenceSetByKmeans {CNVPanelizer}R Documentation

SelectReferenceSetByKmeans

Description

Select a reference set using Kmeans

Usage

    SelectReferenceSetByKmeans(allSamplesReadCounts,
			       normalizationMethod = "tmm",
			       referenceNumberOfElements)

Arguments

allSamplesReadCounts

All samples read counts matrix

normalizationMethod

tmm (trimmed mean of m values) or tss (total sum scaling)

referenceNumberOfElements

Number of elements to select for the reference set

Value

Returns a list of sample identifiers to be used as reference

Author(s)

Cristiano Oliveira

Examples

    
    
    SelectReferenceSetByKmeans(allSamplesReadCounts, 
                               normalizationMethod = "tmm", 
                               referenceNumberOfElements)
    

[Package CNVPanelizer version 1.26.0 Index]