dataset_preprocessing {CIMICE}R Documentation

Run CIMICE preprocessing

Description

executes the preprocessing steps of CIMICE

Usage

dataset_preprocessing(dataset)

Arguments

dataset

a mutational matrix as a (sparse) matrix

Details

Preprocessing steps:

1) dataset is compacted

2) genotype frequencies are computed

3) labels are prepared

Value

a list containing the mutational matrix ("samples"), the mutational frequencies of the genotypes ("freqs"), the node labels ("labels") and finally the gene names ("genes")

Examples

require(dplyr)
example_dataset() %>% dataset_preprocessing


[Package CIMICE version 1.2.1 Index]