CTSScoordinatesGR {CAGEr} | R Documentation |
CAGEr
objectExtracts the genomic coordinates of all detected TSSs from CAGEexp objects.
CTSScoordinatesGR(object) ## S4 method for signature 'CAGEexp' CTSScoordinatesGR(object) CTSScoordinatesGR(object) <- value ## S4 replacement method for signature 'CAGEexp' CTSScoordinatesGR(object) <- value CTSStagCountSE(object) <- value ## S4 replacement method for signature 'CAGEexp' CTSStagCountSE(object) <- value
object |
A |
value |
Coordinates to update, in a format according to the function name. |
CTSScoordinatesGR
returns the coordinates as a CTSS()
object
wrapping genomic ranges. A filteredCTSSidx
column metadata will be present
if clusterCTSS()
was ran earlier.
Vanja Haberle
Charles Plessy
Other CAGEr accessor methods:
CTSSclusteringMethod()
,
CTSScumulativesTagClusters()
,
CTSSnormalizedTpmDF()
,
CTSStagCountDF()
,
GeneExpDESeq2()
,
GeneExpSE()
,
consensusClustersGR()
,
expressionClasses()
,
genomeName()
,
inputFilesType()
,
inputFiles()
,
librarySizes()
,
sampleLabels()
,
seqNameTotalsSE()
,
tagClustersGR()
CTSScoordinatesGR(exampleCAGEexp) CTSScoordinatesGR(exampleCAGEexp)