expressionClasses {CAGEr} | R Documentation |
Retrieves labels of expression classes of individual CTSSs
or consensus clusters from a CAGEr
object.
expressionClasses(object) ## S4 method for signature 'CTSS' expressionClasses(object) ## S4 method for signature 'ConsensusClusters' expressionClasses(object)
object |
A |
Returns a Rle
-encoded vector of labels of expression classes.
The number of labels matches the number of expression clusters returned by
getExpressionProfiles
function.
Other CAGEr expression clustering functions:
getExpressionProfiles()
,
plotExpressionProfiles()
Other CAGEr accessor methods:
CTSSclusteringMethod()
,
CTSScoordinatesGR()
,
CTSScumulativesTagClusters()
,
CTSSnormalizedTpmDF()
,
CTSStagCountDF()
,
GeneExpDESeq2()
,
GeneExpSE()
,
consensusClustersGR()
,
genomeName()
,
inputFilesType()
,
inputFiles()
,
librarySizes()
,
sampleLabels()
,
seqNameTotalsSE()
,
tagClustersGR()
expressionClasses(CTSScoordinatesGR(exampleCAGEexp)) exampleCAGEexp |> consensusClustersGR() |> expressionClasses()