CTSSnormalizedTpmDF {CAGEr} | R Documentation |
Extracts the normalized CAGE signal for all detected TSSs
in all CAGE datasets from CAGEexp
objects.
CTSSnormalizedTpmDF(object) ## S4 method for signature 'CAGEexp' CTSSnormalizedTpmDF(object) CTSSnormalizedTpmGR(object, samples) ## S4 method for signature 'CAGEexp' CTSSnormalizedTpmGR(object, samples)
object |
A |
samples |
The name of sample(s) as reported by |
CTSSnormalizedTpmDF
returns a DataFrame
of normalised expression values.
Vanja Haberle
Charles Plessy
Other CAGEr accessor methods:
CTSSclusteringMethod()
,
CTSScoordinatesGR()
,
CTSScumulativesTagClusters()
,
CTSStagCountDF()
,
GeneExpDESeq2()
,
GeneExpSE()
,
consensusClustersGR()
,
expressionClasses()
,
genomeName()
,
inputFilesType()
,
inputFiles()
,
librarySizes()
,
sampleLabels()
,
seqNameTotalsSE()
,
tagClustersGR()
CTSSnormalizedTpmDF(exampleCAGEexp) CTSSnormalizedTpmGR(exampleCAGEexp, 1) exampleCAGEexp |> CTSSnormalizedTpmGR("all")