summariseChrExpr {CAGEr} | R Documentation |
Counts the number of molecules detected per chromosome, normalises
by library size and stores the raw and normalised results in the
CAGEr
object.
summariseChrExpr(object) ## S4 method for signature 'CAGEexp' summariseChrExpr(object)
object |
A |
Modifies the CAGEexp
by adding a “seqNameTotals” experiment
containing matrices where rows represent chromosomes and columns represent samples.
Charles Plessy
seqNameTotals
Other CAGEr object modifiers:
CTSStoGenes()
,
CustomConsensusClusters()
,
aggregateTagClusters()
,
annotateCTSS()
,
clusterCTSS()
,
cumulativeCTSSdistribution()
,
getCTSS()
,
normalizeTagCount()
,
quantilePositions()
summariseChrExpr(exampleCAGEexp)