quickGenes {CAGEfightR}R Documentation

Identify and quantify genes.

Description

A convienient wrapper around assignGeneID, and quantifyGenes. Also removes unstranded features

Usage

quickGenes(object, geneModels = NULL, ...)

Arguments

object

RangedSummarizedExperiment: Location and counts of clusters, usually found by calling quantifyClusters.

geneModels

TxDb or GRanges: Gene models via a TxDb, or manually specified as a GRangesList.

...

additional arguments passed to assignGeneID.

Value

RangedSummarizedExperiment containing gene expression and clusters assigned within each gene.

See Also

Other Wrapper functions: quickEnhancers(), quickTSSs()

Examples

# See the CAGEfightR vignette for an overview!

[Package CAGEfightR version 1.14.0 Index]