RscoreTrack {BubbleTree} | R Documentation |
get the RScore track
RscoreTrack(.Object, result.dat, gr2, cnv.gr = NULL, min.prev = 0.15, ymax = 3, cex = 1.5) ## S4 method for signature 'TrackPlotter' RscoreTrack(.Object, result.dat, gr2, cnv.gr = NULL, min.prev = 0.15, ymax = 3, cex = 1.5)
.Object |
the object |
result.dat |
the results |
gr2 |
the gr2 object |
cnv.gr |
cnv annotation |
min.prev |
previous min |
ymax |
max y |
cex |
the cex |
the highlighted RScore track
load(system.file("data", "allCall.lst.RData", package="BubbleTree")) load(system.file("data", "centromere.dat.rda", package="BubbleTree")) load(system.file("data", "allCNV.lst.RData", package="BubbleTree")) load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree")) gr2 = centromere.dat trackplotter <- new("TrackPlotter") nn <- "sam2" z <- RscoreTrack(trackplotter, allCall.lst[[nn]]@result, gr2, allCNV.lst[[nn]])