xyTrack {BubbleTree} | R Documentation |
get the xy track
xyTrack(.Object, result.dat, gr2, min.prev = 0.15, ymax = 4.3) ## S4 method for signature 'TrackPlotter' xyTrack(.Object, result.dat, gr2, min.prev = 0.15, ymax = 4.3)
.Object |
the object |
result.dat |
result dataframe |
gr2 |
gr2 object |
min.prev |
previous min |
ymax |
the max y |
the highlighted xy track
load(system.file("data", "allCall.lst.RData", package="BubbleTree")) load(system.file("data", "centromere.dat.rda", package="BubbleTree")) load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree")) trackplotter <- new("TrackPlotter") gr2 = centromere.dat nn <- "sam2" ymax <- ifelse(nn %in% c("lung.wgs", "lung.wes"), 9, 4.3) p1 <- xyTrack(trackplotter, result.dat=allCall.lst[[nn]]@result, gr2=gr2, ymax=ymax) + ggplot2::labs(title=nn)