add_sym {BiocOncoTK}R Documentation

add symbols in rowData to a SummarizedExperiment that has Entrez IDs for rownames

Description

add symbols in rowData to a SummarizedExperiment that has Entrez IDs for rownames

Usage

add_sym(x)

Arguments

x

SummarizedExperiment instance

Note

Will fail if 'symbol' is a column of rowData(x)

Examples

if (interactive()) {
  bq = pancan_BQ()
  rnse = try(buildPancanSE(bq, assay="RNASeqv2"))
  if (inherits(rnse, "try-error")) stop("probably need CGC_BILLING set in environment or with pancan_BQ")
  add_sym(rnse)
}

[Package BiocOncoTK version 1.14.0 Index]