module_stability {BioNERO}R Documentation

Perform module stability analysis

Description

Perform module stability analysis

Usage

module_stability(exp, net, nRuns = 20)

Arguments

exp

A gene expression data frame with genes in row names and samples in column names or a 'SummarizedExperiment' object.

net

List object returned by exp2gcn.

nRuns

Number of times to resample. Default is 20.

Value

A base plot with the module stability results.

See Also

sampledBlockwiseModules,matchLabels,plotDendroAndColors

Examples

data(filt.se)
# The SFT fit was previously calculated and the optimal power was 16
gcn <- exp2gcn(filt.se, SFTpower = 18, cor_method = "pearson")
# For simplicity, only 2 runs
module_stability(exp = filt.se, net = gcn, nRuns = 2)

[Package BioNERO version 1.2.0 Index]