setSignal {BindingSiteFinder} | R Documentation |
Signal data is loaded from the path specified in getMeta
columns "clPlus" and "clMinus" and stored as a list of RLE lists.
setSignal(object, ...) ## S4 method for signature 'BSFDataSet' setSignal(object, newSignal)
object |
a BSFDataSet object |
... |
additional arguments |
newSignal |
list of RLE lists |
an object of type BSFDataSet
with updated signal
# load data files <- system.file("extdata", package="BindingSiteFinder") load(list.files(files, pattern = ".rda$", full.names = TRUE)) sgn = getSignal(bds) sgn = lapply(sgn, function(selStrand){ lapply(selStrand, function(chrList){ chrList[names(chrList) == "chr22"] }) }) bdsNew = setSignal(bds, sgn)