setAnnotationFromFile {BgeeCall} | R Documentation |
Method of the class UserMetadata. Set annotation_object of one UserMetadata object by providing the path to a fasta transcriptome file.
setAnnotationFromFile(userObject, annotationPath, annotationName) ## S4 method for signature 'UserMetadata,character,missing' setAnnotationFromFile(userObject, annotationPath, annotationName) ## S4 method for signature 'UserMetadata,character,character' setAnnotationFromFile(userObject, annotationPath, annotationName)
userObject |
The UserMetadata object |
annotationPath |
Absolute path to the annotation file |
annotationName |
(optional) Name of the annotation. Will be used to create folders. |
If no annotationName is provided the name of the annotation file will be used to create folders.
An object of the class UserMetadata
{ # path to gtf annotation file annotation_file <- system.file("extdata", "annotation.gtf", package = "BgeeCall") user <- new("UserMetadata") user <- setAnnotationFromFile(user, annotation_file, "annotation_name") }