normalizeFragmentData {Basic4Cseq}R Documentation

Normalize near-cis fragment data read count

Description

This function provides a simple RPM (reads per million) normalization for near-cis fragment data read counts of a Data4Cseq object. A form of normalization is especially important for the comparison of samples with a different read count.

Usage

normalizeFragmentData(expData)

Arguments

expData

Experiment data of class Data4Cseq with information on the 4C-seq experiment

Value

Data frame with RPM-normalized data

Author(s)

Carolin Walter

Examples

    data(liverDataRaw)
    normalizedFragments<-normalizeFragmentData(liverDataRaw)
    head(normalizedFragments)

[Package Basic4Cseq version 1.30.0 Index]