baseline_expression_values {BUSseq} | R Documentation |
BUSseq_MCMC
Function
The function gives the estimated log-scale baseline expression levels from the
output SingleCellExperiment
object.
baseline_expression_values(sce_BUSseqfit)
sce_BUSseqfit |
An output |
alpha.est |
The estimated log-scale baseline expression levels, a G-dimensional vector whose g-th element is the estimated log-scale mean gene expression level of gene g in the first cell type. |
Fangda Song
Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.
# "BUSseqfits_example" is an example output BUSseqfits_example alpha.est <- baseline_expression_values(BUSseqfits_example)