dropout_coefficient_values {BUSseq}R Documentation

Obtain the Coefficients of the Logistic Regression for the Dropout Events from the Output of the BUSseq_MCMC Function

Description

The function gives the intercept and odds ratio of the logistic regression for dropout events in the output SingleCellExperiment object.

Usage

dropout_coefficient_values(sce_BUSseqfit)

Arguments

sce_BUSseqfit

An output SingleCellExperiment object by the function BUSseq_MCMC.

Value

gamma.est

The estimated intercept and log ratio of the logistic regression for dropout events, a 2-diminsional vector.

Author(s)

Fangda Song

References

Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.

Examples

# "BUSseqfits_example" is an example output
BUSseqfits_example
gamma.est <- dropout_coefficient_values(BUSseqfits_example)

[Package BUSseq version 1.0.0 Index]