cell_effect_values {BUSseq} | R Documentation |
BUSseq_MCMC
Function
The function gives the estimated cell-specific size effects in the output
SingleCellExperiment
object.
cell_effect_values(sce_BUSseqfit)
sce_BUSseqfit |
An output |
delta.est |
The estimated cell-specific global effects, an N-dimensional vector. Note that the first element in each vector is zero as the first cell in each batch is taken as the reference cell. |
Fangda Song
Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.
# "BUSseqfits_example" is an example output BUSseqfits_example delta.est <- cell_effect_values(BUSseqfits_example)