celltype_mean_expression {BUSseq} | R Documentation |
BUSseq_MCMC
Function
The function gives the estimated cell-type-specific mean expression
levels in the output SingleCellExperiment
object.
celltype_mean_expression(sce_BUSseqfit)
sce_BUSseqfit |
An output |
mu.est |
The estimated cell-type-specific mean expression levels, a G by K matrix, whose [g,k] element is the mean expression levels of cell type k on gene g. |
Fangda Song
Song, Fangda, Ga Ming Angus Chan, and Yingying Wei. Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. Nature communications 11, no. 1 (2020): 1-15.
# "BUSseqfits_example" is an example output BUSseqfits_example mu.est <- celltype_mean_expression(BUSseqfits_example)