check_genome {BUSpaRse} | R Documentation |
Check for chromosomes in genome but not annotation
Description
Check for chromosomes in genome but not annotation
Usage
check_genome(chrs_use, Genome)
Arguments
chrs_use |
Character vector of names of chromosomes present in both the
annotation and the genome.
|
Genome |
Either a BSgenome or a XStringSet
object of genomic sequences, where the intronic sequences will be extracted
from. Use genomeStyles to check which styles are supported for
your organism of interest; supported styles can be interconverted. If the
style in your genome or annotation is not supported, then the style of
chromosome names in the genome and annotation should be manually set to be
consistent.
|
Value
Nothing. Will emit message if the genome contains chromosomes absent
from the annotation.
[Package
BUSpaRse version 1.8.0
Index]