getQuantiles {ARRmNormalization} | R Documentation |
It returns the percentiles of a betaMatrix for Type I Green, Type I Red and Type II probes. If no list of probes is provided, all probes are taken into account to compute the percentiles.
getQuantiles(betaMatrix,goodProbes=NULL)
betaMatrix |
|
goodProbes |
Ids of the probes to be normalized (Id. of the form "cg00000029"). |
Returns a list
of three matrices of percentiles. For Type I green and Type I red probes, the corresponding matrices can be accessed by $green
and $red
. For Type II probes, the matrix can be accessed by $II
Jean-Philippe Fortin <jfortin@jhsph.edu>
data(greenControlMatrix) data(redControlMatrix) data(sampleNames) data(betaMatrix) quantiles=getQuantiles(betaMatrix)