HyperGTestGeneEnrichment {AMARETTO} | R Documentation |
Calculates the p-values for unranked gene set enrichment based on two gmt files as input and the hyper geometric test.
HyperGTestGeneEnrichment(gmtfile, testgmtfile, NrCores, ref.numb.genes = 45956)
gmtfile |
The gmt file with reference gene set. |
testgmtfile |
The gmt file with gene sets to test. In our case, the gmt file of the modules. |
NrCores |
Number of cores used for parallelization. |
ref.numb.genes |
The total number of genes teste, standard equal to 45 956 (MSIGDB standard). |
result