AMARETTO_ExportResults {AMARETTO} | R Documentation |
Retrieve a download of all the data linked with the run (including heatmaps)
AMARETTO_ExportResults(AMARETTOinit, AMARETTOresults, data_address, Heatmaps = TRUE, CNV_matrix = NULL, MET_matrix = NULL)
AMARETTOinit |
AMARETTO initialize output |
AMARETTOresults |
AMARETTO results output |
data_address |
Directory to save data folder |
Heatmaps |
Output heatmaps as pdf |
CNV_matrix |
CNV_matrix |
MET_matrix |
MET_matrix |
result
data('ProcessedDataLIHC') TargetDirectory <- file.path(getwd(),"Downloads/");dir.create(TargetDirectory) AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC, NrModules = 2, VarPercentage = 50) AMARETTOresults <- AMARETTO_Run(AMARETTOinit) AMARETTO_ExportResults(AMARETTOinit,AMARETTOresults,TargetDirectory,Heatmaps = FALSE)