results {ABSSeq} | R Documentation |
Accessor functions for the result from a ABSDataSet by given names
## S4 method for signature 'ABSDataSet' results(object, cnames = c("Amean", "Bmean", "baseMean", "absD", "Variance", "rawFC", "lowFC", "foldChange", "pvalue", "adj.pvalue", "trimmed"))
object |
a ABSDataSet |
cnames |
a vecotr of names for output, which are among:
'Amean','Bmean', log2 of mean counts for group A and B,
"baseMean', estimated mean for absolute counts difference (absD), used for mu in |
This function returns the result of ABSSeq as a table or a vector depended on
the given names, see ABSSeq
a table according to canmes.
data(simuN5) obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups)) obj <- normalFactors(obj) obj <- callParameter(obj) obj <- callDEs(obj) head(results(obj))