Bioconductor version: Release (3.13)
This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.
Author: Alyssa C. Frazee, Andrew E. Jaffe, Rory Kirchner, Jeffrey T. Leek
Maintainer: Jack Fu <jmfu at jhsph.edu>, Jeff Leek <jtleek at gmail.com>
Citation (from within R,
enter citation("polyester")
):
To install this package, start R (version "4.1") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("polyester")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("polyester")
HTML | R Script | The Polyester package for simulating RNA-seq reads |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, Sequencing, Software |
Version | 1.28.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (7 years) |
License | Artistic-2.0 |
Depends | R (>= 3.0.0) |
Imports | Biostrings(>= 2.32.0), IRanges, S4Vectors, logspline, limma, zlibbioc |
LinkingTo | |
Suggests | knitr, ballgown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | polyester_1.28.0.tar.gz |
Windows Binary | polyester_1.28.0.zip |
macOS 10.13 (High Sierra) | polyester_1.28.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/polyester |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/polyester |
Package Short Url | https://bioconductor.org/packages/polyester/ |
Package Downloads Report | Download Stats |
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