ndexr

DOI: 10.18129/B9.bioc.ndexr    

NDEx R client library

Bioconductor version: Release (3.13)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Florian Auer <florian.auer at informatik.uni-augsburg.de>, Frank Kramer <frank.kramer at informatik.uni-augsburg.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ndexr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ndexr")

 

HTML	R Script	NDExR Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Network, Pathways, Software
Version	1.14.1
In Bioconductor since	BioC 3.6 (R-3.4) (4 years)
License	BSD
Depends	igraph
Imports	httr, jsonlite, plyr, tidyr
LinkingTo
Suggests	BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/frankkramer-lab/ndexr
BugReports	https://github.com/frankkramer-lab/ndexr/issues
Depends On Me
Imports Me	netgsa
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ndexr_1.14.1.tar.gz
Windows Binary	ndexr_1.14.1.zip
macOS 10.13 (High Sierra)	ndexr_1.14.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ndexr
Package Short Url	https://bioconductor.org/packages/ndexr/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.13	Source Archive