moanin

DOI: 10.18129/B9.bioc.moanin    

An R Package for Time Course RNASeq Data Analysis

Bioconductor version: Release (3.13)

Simple and efficient workflow for time-course gene expression data, built on publictly available open-source projects hosted on CRAN and bioconductor. moanin provides helper functions for all the steps required for analysing time-course data using functional data analysis: (1) functional modeling of the timecourse data; (2) differential expression analysis; (3) clustering; (4) downstream analysis.

Author: Elizabeth Purdom [aut] , Nelle Varoquaux [aut, cre]

Maintainer: Nelle Varoquaux <nelle.varoquaux at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("moanin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("moanin")

 

HTML	R Script	Installation
PDF		Reference Manual
Text		README
Text		LICENSE

Details

biocViews	Clustering, DifferentialExpression, GeneExpression, Microarray, RNASeq, Software, TimeCourse
Version	1.0.0
In Bioconductor since	BioC 3.13 (R-4.1) (< 6 months)
License	BSD 3-clause License + file LICENSE
Depends	R (>= 4.0), SummarizedExperiment, topGO, stats
Imports	S4Vectors, MASS (>= 1.0.0), limma, viridis, edgeR, graphics, methods, grDevices, reshape2, NMI, zoo, ClusterR, splines, matrixStats
LinkingTo
Suggests	testthat (>= 1.0.0), timecoursedata, knitr, rmarkdown, covr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	moanin_1.0.0.tar.gz
Windows Binary	moanin_1.0.0.zip
macOS 10.13 (High Sierra)	moanin_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/moanin
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/moanin
Package Short Url	https://bioconductor.org/packages/moanin/
Package Downloads Report	Download Stats