methylMnM

DOI: 10.18129/B9.bioc.methylMnM    

detect different methylation level (DMR)

Bioconductor version: Release (3.13)

To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.

Author: Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

Maintainer: Yan Zhou<zhouy1016 at 163.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methylMnM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylMnM")

 

PDF	R Script	methylMnM
PDF		Reference Manual

Details

biocViews	DNAMethylation, Sequencing, Software
Version	1.30.0
In Bioconductor since	BioC 2.13 (R-3.0) (8 years)
License	GPL-3
Depends	R (>= 2.12.1), edgeR, statmod
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	SIMD
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methylMnM_1.30.0.tar.gz
Windows Binary	methylMnM_1.30.0.zip
macOS 10.13 (High Sierra)	methylMnM_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/methylMnM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/methylMnM
Package Short Url	https://bioconductor.org/packages/methylMnM/
Package Downloads Report	Download Stats