cellmigRation

DOI: 10.18129/B9.bioc.cellmigRation    

Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Bioconductor version: Release (3.13)

Import TIFF images of fluorescently labeled cells, and track cell movements over time. Parallelization is supported for image processing and for fast computation of cell trajectories. In-depth analysis of cell trajectories is enabled by 15 trajectory analysis functions.

Author: Salim Ghannoum [aut, cph], Damiano Fantini [aut, cph], Waldir Leoncio [cre, aut], Øystein Sørensen [aut]

Maintainer: Waldir Leoncio <w.l.netto at medisin.uio.no>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cellmigRation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellmigRation")

 

HTML	R Script	cellmigRation
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	CellBiology, DataImport, DataRepresentation, Software
Version	1.0.0
In Bioconductor since	BioC 3.13 (R-4.1) (< 6 months)
License	GPL-2
Depends	R (>= 4.1), methods, foreach
Imports	tiff, graphics, stats, utils, reshape2, parallel, doParallel, grDevices, matrixStats, FME, SpatialTools, sp, vioplot, FactoMineR, Hmisc
LinkingTo
Suggests	knitr, rmarkdown, dplyr, ggplot2, RUnit, BiocGenerics, BiocManager, kableExtra, rgl
SystemRequirements
Enhances
URL	https://github.com/ocbe-uio/cellmigRation/
BugReports	https://github.com/ocbe-uio/cellmigRation/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cellmigRation_1.0.0.tar.gz
Windows Binary	cellmigRation_1.0.0.zip
macOS 10.13 (High Sierra)	cellmigRation_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cellmigRation
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cellmigRation
Package Short Url	https://bioconductor.org/packages/cellmigRation/
Package Downloads Report	Download Stats