adSplit

DOI: 10.18129/B9.bioc.adSplit    

Annotation-Driven Clustering

Bioconductor version: Release (3.13)

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("adSplit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adSplit")

 

PDF	R Script	Annotation-Driven Clustering
PDF		Reference Manual

Details

biocViews	Clustering, Microarray, Software
Version	1.62.0
In Bioconductor since	BioC 1.8 (R-2.3) (15.5 years)
License	GPL (>= 2)
Depends	R (>= 2.1.0), methods (>= 2.1.0)
Imports	AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGGREST(>= 1.30.1), multtest(>= 1.6.0), stats (>= 2.1.0)
LinkingTo
Suggests	golubEsets(>= 1.0), vsn(>= 1.5.0), hu6800.db(>= 1.8.1)
SystemRequirements
Enhances
URL	http://compdiag.molgen.mpg.de/software/adSplit.shtml
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	adSplit_1.62.0.tar.gz
Windows Binary	adSplit_1.62.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	adSplit_1.62.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/adSplit
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/adSplit
Package Short Url	https://bioconductor.org/packages/adSplit/
Package Downloads Report	Download Stats