Rbowtie2

DOI: 10.18129/B9.bioc.Rbowtie2    

An R Wrapper for Bowtie2 and AdapterRemoval

Bioconductor version: Release (3.13)

This package provides an R wrapper of the popular bowtie2 sequencing reads aligner and AdapterRemoval, a convenient tool for rapid adapter trimming, identification, and read merging.

Author: Zheng Wei, Wei Zhang

Maintainer: Zheng Wei <wzweizheng at qq.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rbowtie2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbowtie2")

 

HTML	R Script	An Introduction to Rbowtie2
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, Preprocessing, Sequencing, Software
Version	1.14.0
In Bioconductor since	BioC 3.6 (R-3.4) (4 years)
License	GPL (>= 3)
Depends	R (>= 3.5)
Imports
LinkingTo
Suggests	knitr
SystemRequirements	C++11
Enhances
URL
Depends On Me
Imports Me	esATAC, UMI4Cats
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rbowtie2_1.14.0.tar.gz
Windows Binary	Rbowtie2_1.14.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	Rbowtie2_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rbowtie2
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rbowtie2
Package Short Url	https://bioconductor.org/packages/Rbowtie2/
Package Downloads Report	Download Stats