RNAither

DOI: 10.18129/B9.bioc.RNAither    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RNAither.

Statistical analysis of high-throughput RNAi screens

Bioconductor version: Release (3.13)

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Lars Kaderali <lars.kaderali at uni-greifswald.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAither")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Annotation, CellBasedAssays, GO, ImmunoOncology, Preprocessing, QualityControl, Software, Visualization
Version	2.40.0
In Bioconductor since	BioC 2.3 (R-2.8) (13 years)
License	Artistic-2.0
Depends	R (>= 2.10), topGO, RankProd, prada
Imports	geneplotter, limma, biomaRt, car, splots, methods
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/RNAither
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RNAither
Package Short Url	https://bioconductor.org/packages/RNAither/
Package Downloads Report	Download Stats