RDAVIDWebService

DOI: 10.18129/B9.bioc.RDAVIDWebService    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RDAVIDWebService.

An R Package for retrieving data from DAVID into R objects using Web Services API.

Bioconductor version: Release (3.13)

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RDAVIDWebService")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DifferentialExpression, GraphAndNetwork, Software, Visualization
Version	1.30.0
In Bioconductor since	BioC 2.13 (R-3.0) (8 years)
License	GPL (>=2)
Depends	R (>= 2.14.1), methods, graph, GOstats, ggplot2
Imports	Category, GO.db, RBGL, rJava
LinkingTo
Suggests	Rgraphviz
SystemRequirements
Enhances
URL	http://www.bdmg.com.ar http://david.abcc.ncifcrf.gov/
Depends On Me	CompGO
Imports Me
Suggests Me	IntramiRExploreR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/RDAVIDWebService
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RDAVIDWebService
Package Short Url	https://bioconductor.org/packages/RDAVIDWebService/
Package Downloads Report	Download Stats