PCpheno

DOI: 10.18129/B9.bioc.PCpheno    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PCpheno.

Phenotypes and cellular organizational units

Bioconductor version: Release (3.13)

Tools to integrate, annotate, and link phenotypes to cellular organizational units such as protein complexes and pathways.

Author: Nolwenn Le Meur and Robert Gentleman

Maintainer: Nolwenn Le Meur <nlemeur at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PCpheno")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	GraphAndNetwork, Network, Proteomics, Software
Version	1.54.0
In Bioconductor since	BioC 2.2 (R-2.7) (13.5 years)
License	Artistic-2.0
Depends	R (>= 2.10), Category, ScISI(>= 1.3.0), SLGI, ppiStats, ppiData, annotate(>= 1.17.4)
Imports	AnnotationDbi, Biobase, Category, GO.db, graph, graphics, GSEABase, KEGG.db, methods, ScISI, stats, stats4
LinkingTo
Suggests	KEGG.db, GO.db, org.Sc.sgd.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/PCpheno
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PCpheno
Package Short Url	https://bioconductor.org/packages/PCpheno/
Package Downloads Report	Download Stats