Bioconductor version: Release (3.13)
Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.
Author: Patrick Aboyoun [aut], Nicole Ortogero [cre], Zhi Yang [ctb]
Maintainer: Nicole Ortogero <nortogero at nanostring.com>
Citation (from within R,
enter citation("NanoStringNCTools")
):
To install this package, start R (version "4.1") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("NanoStringNCTools")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NanoStringNCTools")
HTML | R Script | Introduction to the NanoStringRCCSet Class |
Reference Manual | ||
Text | NEWS |
biocViews | CellBasedAssays, DataImport, GeneExpression, ProprietaryPlatforms, Proteomics, RNASeq, Software, Transcription, Transcriptomics, mRNAMicroarray |
Version | 1.0.0 |
In Bioconductor since | BioC 3.13 (R-4.1) (< 6 months) |
License | Artistic-2.0 |
Depends | R (>= 3.6), Biobase, S4Vectors, ggplot2 |
Imports | BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes, grDevices, IRanges, methods, pheatmap, RColorBrewer, stats, utils |
LinkingTo | |
Suggests | biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | GeomxTools |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | NanoStringNCTools_1.0.0.tar.gz |
Windows Binary | NanoStringNCTools_1.0.0.zip |
macOS 10.13 (High Sierra) | NanoStringNCTools_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/NanoStringNCTools |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NanoStringNCTools |
Package Short Url | https://bioconductor.org/packages/NanoStringNCTools/ |
Package Downloads Report | Download Stats |
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