MouseFM

DOI: 10.18129/B9.bioc.MouseFM    

In-silico methods for genetic finemapping in inbred mice

Bioconductor version: Release (3.13)

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Author: Matthias Munz <matthias.munz at gmx.de>, Inken Wohlers <inken.wohlers at uni-luebeck.de.de>, Hauke Busch <hauke.busch at uni-luebeck.de.de>

Maintainer: Matthias Munz <matthias.munz at gmx.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseFM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation
Version	1.2.0
In Bioconductor since	BioC 3.12 (R-4.0) (1 year)
License	GPL-3
Depends	R (>= 4.0.0)
Imports	httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, GenomeInfoDb, methods, biomaRt, stats, IRanges
LinkingTo
Suggests	BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/matmu/MouseFM/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/MouseFM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MouseFM
Package Short Url	https://bioconductor.org/packages/MouseFM/
Package Downloads Report	Download Stats