IsoCorrectoRGUI

DOI: 10.18129/B9.bioc.IsoCorrectoRGUI    

Graphical User Interface for IsoCorrectoR

Bioconductor version: Release (3.13)

IsoCorrectoRGUI is a Graphical User Interface for the IsoCorrectoR package. IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O...), as well as high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously).

Author: Christian Kohler [cre, aut], Paul Kuerner [aut], Paul Heinrich [aut]

Maintainer: Christian Kohler <christian.kohler at ur.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IsoCorrectoRGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IsoCorrectoRGUI")

 

HTML	R Script	IsoCorrectoR
PDF		Reference Manual
Text		NEWS

Details

biocViews	GUI, ImmunoOncology, MassSpectrometry, Metabolomics, Preprocessing, Software
Version	1.8.0
In Bioconductor since	BioC 3.9 (R-3.6) (2.5 years)
License	GPL-3
Depends	R (>= 3.6)
Imports	IsoCorrectoR, readxl, tcltk2, tcltk, utils
LinkingTo
Suggests	knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://genomics.ur.de/files/IsoCorrectoRGUI
Depends On Me
Imports Me
Suggests Me	IsoCorrectoR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IsoCorrectoRGUI_1.8.0.tar.gz
Windows Binary	IsoCorrectoRGUI_1.8.0.zip
macOS 10.13 (High Sierra)	IsoCorrectoRGUI_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IsoCorrectoRGUI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IsoCorrectoRGUI
Package Short Url	https://bioconductor.org/packages/IsoCorrectoRGUI/
Package Downloads Report	Download Stats