ExpressionView

DOI: 10.18129/B9.bioc.ExpressionView    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ExpressionView.

Visualize biclusters identified in gene expression data

Bioconductor version: Release (3.13)

ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Author: Andreas Luscher <andreas.luescher at a3.epfl.ch>

Maintainer: Gabor Csardi <csardi.gabor at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExpressionView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Classification, GO, GeneExpression, KEGG, Microarray, Software, Visualization
Version	1.44.0
In Bioconductor since	BioC 2.6 (R-2.11) (11.5 years)
License	GPL (>= 2)
Depends	caTools, bitops, methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
Imports	methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
LinkingTo
Suggests	ALL, hgu95av2.db, biclust, affy
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/ExpressionView
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ExpressionView
Package Short Url	https://bioconductor.org/packages/ExpressionView/
Package Downloads Report	Download Stats