EBSEA

DOI: 10.18129/B9.bioc.EBSEA    

Exon Based Strategy for Expression Analysis of genes

Bioconductor version: Release (3.13)

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Author: Arfa Mehmood, Asta Laiho, Laura L. Elo

Maintainer: Arfa Mehmood <arfa.mehmood at utu.fi>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSEA")

 

HTML	R Script	EBSEA
PDF		Reference Manual

Details

biocViews	DifferentialExpression, GeneExpression, Sequencing, Software
Version	1.20.0
In Bioconductor since	BioC 3.3 (R-3.3) (5.5 years)
License	GPL-2
Depends	R (>= 4.0.0)
Imports	DESeq2, graphics, stats, EmpiricalBrownsMethod
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EBSEA_1.20.0.tar.gz
Windows Binary	EBSEA_1.20.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	EBSEA_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EBSEA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EBSEA
Package Short Url	https://bioconductor.org/packages/EBSEA/
Package Downloads Report	Download Stats